Cheers,
Christopher Curry
Assistant Technical Librarian / Assistant IT Officer
American Philosophical Society
105 South Fifth Street
Philadelphia, PA 19106-3386
Tel. (215) 599-4299
I wouldn't be surprised if this was related to dynamic allocation on the VM. Essentially, it can inject a random very large I/O latency to any operation. It may also change the hardware model used by the VM.
I would recommend looking at InnoDB diagnostics, and possibly starting up w/ innodb_force_recovery=1 set in my.cnf. Run "check table" on each table (or at least the ones you've detected problems with) for closer analysis.
--Joe